This story is from July 25, 2006

Second code found in DNA

The new result was plausible as it generalised the idea that DNA is more bendable at certain sequences.
Second code found in DNA
The second code, superimposed on the first, sets placement of nucleosomes, miniature protein spools around which the DNA is looped. The spools both protect and control access to the DNA itself.
The discovery, if confirmed, could open new insights into the higher order control of the genes, like the critical but still mysterious process by which each type of human cell is allowed to activate the genes it needs but cannot access the genes used by other types of cell.

The new code is described in the current issue of Nature by Eran Segal of the Weizmann Institute in Israel and Jonathan Widom of Northwestern University in Illinois and their colleagues.
There are about 30 million nucleosomes in each human cell. So many are needed because the DNA strand wraps around each one only 1.65 times, in a twist containing 147 of its units, and the DNA molecule in a single chromosome can be up to 225 million units in length.
Biologists have suspected for years that some positions on the DNA, notably those where it bends most easily, might be more favourable for nucleosomes than others, but no overall pattern was apparent.
Segal and Widom analysed the sequence at some 200 sites in the yeast genome, and discovered that there is indeed a hidden pattern.
Knowing the pattern, they were able to predict the placement of about 50% of the nucleosomes in other organisms. Experts said the new result was plausible as it generalised the long-standing idea that DNA is more bendable at certain sequences.
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